Protocol for integrative transcriptomic/metabolomic analysis: A case study on factors influencing the oyster-POMS disease
Leo Duperret, Alejandro Valdivieso, Bruno Petton, Benjamin Morga, Nicole Faury, Julien de Lorgeril, Charlotte Corporeau, Lionel Degremont, Sylvain Henry, Andrei Turtoi, Juliette Pouzadoux, Océane Romatif, Gaelle Courtay, Cristián J Monaco, Eve Toulza, Arnaud Lagorce, Jeremie Vidal-Dupiol, Guillaume · 2026
Read Protocol for integrative transcriptomic/metabolomic analysis: A case study on factors influencing the oyster-POMS disease by Leo Duperret, Alejandro Valdivieso, Bruno Petton, Benjamin Morga, Nicole Faury, Julien de Lorgeril, Charlotte Corporeau, Lionel Degremont, Sylvain Henry, Andrei Turtoi, Juliette Pouzadoux, Océane Romatif, Gaelle Courtay, Cristián J Monaco, Eve Toulza, Arnaud Lagorce, Jeremie Vidal-Dupiol, Guillaume (2026) in the Tower of Babel, a free online library of public-domain works preserved in clean, searchable text. No sign-up. The full text is served as a plain-text file at a predictable URL, where text is present: https://antarctic-labs.com/tower-of-babel/pmc-13659763.txt.
Description
Leo Duperret and co-authors published a protocol paper in 2026 on joining gene activity and metabolite data in one analysis. The case study is a disease that kills Pacific oysters, driven by host, pathogen, and environment together. Single-layer studies miss how these levels interact. The protocol aims to move past plain correlation toward functional sense.
Steps run from separate workflows for each data type to a joined frame. Named software packages handle network grouping for gene data and pathway mapping for metabolites. Cross-checks at the system level test the joined picture. The paper points readers to an earlier study for full details on use and execution.
Catalog record
| CREATOR | Leo Duperret, Alejandro Valdivieso, Bruno Petton, Benjamin Morga, Nicole Faury, Julien de Lorgeril, Charlotte Corporeau, Lionel Degremont, Sylvain Henry, Andrei Turtoi, Juliette Pouzadoux, Océane Romatif, Gaelle Courtay, Cristián J Monaco, Eve Toulza, Arnaud Lagorce, Jeremie Vidal-Dupiol, Guillaume |
|---|---|
| YEAR | 2026 |
| COLLECTION | PAPERS |
| FORMAT | TXT |
| FILE SIZE | 52 KB |
| VERSION | 1.0 |
| LICENSE | CC BY 4.0 |
| RIGHTS | CC BY |
| SOURCE | Europe PMC |