Integrating a host biomarker with a large language model for diagnosis of lower respiratory tract infection

Hoang Van Phan, Natasha Spottiswoode, Emily C Lydon, Victoria T Chu, Adolfo Cuesta, Alexander D Kazberouk, Natalie L Richmond, Padmini Deosthale, Carolyn S Calfee, Charles R Langelier · 2025

Read Integrating a host biomarker with a large language model for diagnosis of lower respiratory tract infection by Hoang Van Phan, Natasha Spottiswoode, Emily C Lydon, Victoria T Chu, Adolfo Cuesta, Alexander D Kazberouk, Natalie L Richmond, Padmini Deosthale, Carolyn S Calfee, Charles R Langelier (2025) in the Tower of Babel, a free online library of public-domain works preserved in clean, searchable text. No sign-up. The full text is served as a plain-text file at a predictable URL, where text is present: https://antarctic-labs.com/tower-of-babel/pmc-12708615.txt.

Description

Hoang Phan and co-authors pair a lung gene signal with a language model to diagnose chest infection. In very ill patients, lung infection can look just like non infectious lung failure. Wrong calls in either direction carry costs. The team tested a combined judge on critically ill adults.

One input is the level of a gene, FABP4, read from lung related samples. The other is a large language model's read of the chart text. Together they beat either input alone, and beat the admitting team's own call by a wide margin. A second group of patients confirmed the gain. The authors suggest the pairing could sharpen early calls in intensive care.

Catalog record

CREATORHoang Van Phan, Natasha Spottiswoode, Emily C Lydon, Victoria T Chu, Adolfo Cuesta, Alexander D Kazberouk, Natalie L Richmond, Padmini Deosthale, Carolyn S Calfee, Charles R Langelier
YEAR2025
COLLECTIONPAPERS
FORMATTXT
FILE SIZE33 KB
VERSION1.0
LICENSECC BY 4.0
RIGHTSCC BY
SOURCEEurope PMC

Source: https://europepmc.org/articles/PMC12708615

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