Properties of Maxentropic DNA Synthesis Codes †

Kees Schouhamer Immink, Jos H. Weber, Kui Cai · 2024

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Description

Schouhamer Immink, Weber, and Cai analyze special codes for writing data into DNA in this 2024 paper. DNA data storage synthesizes many strands in parallel. Codes that limit strand weight can shorten synthesis time and cut cost.

The authors study maxentropic low-weight codes, which pack the most information under a weight limit. They derive the redundancy and information rate of these codes for very long codewords. They compare the codes with simpler nibble replacement codes designed to minimize synthesis time. Finally, they examine codes that also limit run lengths. The results help designers of DNA storage systems weigh coding efficiency against synthesis speed.

Catalog record

CREATORKees Schouhamer Immink, Jos H. Weber, Kui Cai
YEAR2024
COLLECTIONPAPERS
FORMATTXT
FILE SIZE18 KB
VERSION1.0
LICENSECC BY 4.0
RIGHTSCC BY
SOURCEEurope PMC

Source: https://europepmc.org/articles/PMC11727101

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