Development of an Open-Source Dataset of Flat-Mounted Images for the Murine Oxygen–Induced Retinopathy Model of Ischemic Retinopathy
Kyle V. Marra, Jimmy S. Chen, Hailey K. Robles-Holmes, Kristine B. Ly, Joseph Miller, Guoqin Wei, Edith Aguilar, Felicitas Bucher, Yoichi Ideguchi, Fritz Gerald P. Kalaw, Andrew C. Lin, Napoleone Ferrara, J. Peter Campbell, Martin Friedlander, Eric Nudleman · 2024
Read Development of an Open-Source Dataset of Flat-Mounted Images for the Murine Oxygen–Induced Retinopathy Model of Ischemic Retinopathy by Kyle V. Marra, Jimmy S. Chen, Hailey K. Robles-Holmes, Kristine B. Ly, Joseph Miller, Guoqin Wei, Edith Aguilar, Felicitas Bucher, Yoichi Ideguchi, Fritz Gerald P. Kalaw, Andrew C. Lin, Napoleone Ferrara, J. Peter Campbell, Martin Friedlander, Eric Nudleman (2024) in the Tower of Babel, a free online library of public-domain works preserved in clean, searchable text. No sign-up. The full text is served as a plain-text file at a predictable URL, where text is present: https://antarctic-labs.com/tower-of-babel/pmc-11620014.txt.
Description
Kyle Marra and a large team of co-authors release an open data set of mouse retina images for studying oxygen-damaged eyes. Their 2024 paper describes flat-mounted retinal images from the oxygen-induced retinopathy model, the standard stand-in for ischemic eye disease in premature infants and diabetics. Images come from mice at three postnatal ages, plus healthy controls raised in normal air.
The collection holds 1,170 images, over a thousand from the disease model, most at the peak-disease age. Four graders hand-traced the major vessels in every image, cross-checking each other for consistency. The set had already served to train and test a published deep learning segmenter. As the first open release of original and traced images for this model, it gives algorithm builders shared ground truth instead of private hoards.
Catalog record
| CREATOR | Kyle V. Marra, Jimmy S. Chen, Hailey K. Robles-Holmes, Kristine B. Ly, Joseph Miller, Guoqin Wei, Edith Aguilar, Felicitas Bucher, Yoichi Ideguchi, Fritz Gerald P. Kalaw, Andrew C. Lin, Napoleone Ferrara, J. Peter Campbell, Martin Friedlander, Eric Nudleman |
|---|---|
| YEAR | 2024 |
| COLLECTION | PAPERS |
| FORMAT | TXT |
| FILE SIZE | 21 KB |
| VERSION | 1.0 |
| LICENSE | CC BY 4.0 |
| RIGHTS | CC BY |
| SOURCE | Europe PMC |