Whole genome sequencing and annotation of Daedaleopsis sinensis, a wood-decaying fungus significantly degrading lignocellulose
Jin-Xin Ma, Hao Wang, Can Jin, Yi-Fan Ye, Lu-Xin Tang, Jing Si, Jie Song · 2024
Read Whole genome sequencing and annotation of Daedaleopsis sinensis, a wood-decaying fungus significantly degrading lignocellulose by Jin-Xin Ma, Hao Wang, Can Jin, Yi-Fan Ye, Lu-Xin Tang, Jing Si, Jie Song (2024) in the Tower of Babel, a free online library of public-domain works preserved in clean, searchable text. No sign-up. The full text is served as a plain-text file at a predictable URL, where text is present: https://antarctic-labs.com/tower-of-babel/pmc-10826855.txt.
Description
Ma and co-authors sequence the genome of Daedaleopsis sinensis, a fungus that rots wood by breaking down its main fibers. Wood decay fungi matter for ecology, industry, and medicine, and genomes reveal how they digest plant matter. Their study, published in 2023, assembles the species' genome for the first time and annotates its genes.
The assembly spans about 51.67 million bases in twenty four contigs and predicts 12,153 protein coding genes. Pathway analysis placed 3,831 genes in nearly 120 metabolic routes. A search for carbohydrate active enzymes found 481, with the fiber cutting hydrolases most common. The authors say the genome clarifies how this fungus degrades lignocellulose and should guide uses in breaking down plant waste.
Catalog record
| CREATOR | Jin-Xin Ma, Hao Wang, Can Jin, Yi-Fan Ye, Lu-Xin Tang, Jing Si, Jie Song |
|---|---|
| YEAR | 2024 |
| COLLECTION | PAPERS |
| FORMAT | TXT |
| FILE SIZE | 45 KB |
| VERSION | 1.0 |
| LICENSE | CC BY 4.0 |
| RIGHTS | CC BY |
| SOURCE | Europe PMC |