IPOP: An Integrative Plant Multi-omics Platform for Cross-species Comparison and Evolutionary Study
Wenyue Huang, Xiaona Hu, Yanlin Ren, Minggui Song, Chuang Ma, Zhenyan Miao, Aida Ouangraoua · 2023
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Description
Wenyue Huang and co-authors build a cross-species plant data commons in a 2023 bioinformatics paper. Sequencing has flooded botany with omics data, genomes, transcripts, proteins, and more, but comparing a gene across species, and across data types, lacked one well-annotated home.
Their platform, IPOP, gathers seven kinds of omics data for thirteen species, six grasses, six broadleaf plants, and a moss, all reprocessed through uniform pipelines. Homology maps, duplication events, and evolutionary age layers ride along. Built-in tools merge the layers per gene and link expression patterns to traits, aiming to make evolutionary questions answerable in a browser.
Catalog record
| CREATOR | Wenyue Huang, Xiaona Hu, Yanlin Ren, Minggui Song, Chuang Ma, Zhenyan Miao, Aida Ouangraoua |
|---|---|
| YEAR | 2023 |
| COLLECTION | PAPERS |
| FORMAT | TXT |
| FILE SIZE | 41 KB |
| VERSION | 1.0 |
| LICENSE | CC BY 4.0 |
| RIGHTS | CC BY |
| SOURCE | Europe PMC |